osl_dynamics.utils.filenames#

Filename containers for M/EEG processing pipelines.

Classes#

`SurfaceFilenames`	Container for surface extraction file paths.
`CoregFilenames`	Container for coregistration file paths.
`OSLFilenames`	Container for all pipeline file paths for processing a single M/EEG session.

Module Contents#

class osl_dynamics.utils.filenames.SurfaceFilenames(root)[source]#

Container for surface extraction file paths.

Parameters:: root (str) – Root directory for surface files.

root[source]#

fsl_dir[source]#

mri_file[source]#

std_brain[source]#

std_brain_bigfov[source]#

mni2mri_flirt_xform_file[source]#

mni_mri_t_file[source]#

bet_outskin_mesh_vtk_file[source]#

bet_inskull_mesh_vtk_file[source]#

bet_outskull_mesh_vtk_file[source]#

bet_outskin_mesh_file[source]#

bet_outskin_plus_nose_mesh_file[source]#

bet_inskull_mesh_file[source]#

bet_outskull_mesh_file[source]#

class osl_dynamics.utils.filenames.CoregFilenames(root)[source]#

Container for coregistration file paths.

Parameters:: root (str) – Root directory for coregistration files.

root[source]#

mri_file[source]#

info_fif_file[source]#

head_scaledmri_t_file[source]#

head_mri_t_file[source]#

ctf_head_mri_t_file[source]#

mrivoxel_scaledmri_t_file[source]#

mri_nasion_file[source]#

mri_rpa_file[source]#

mri_lpa_file[source]#

head_nasion_file[source]#

head_rpa_file[source]#

head_lpa_file[source]#

head_headshape_file[source]#

bet_outskin_surf_file[source]#

bet_outskin_plus_nose_surf_file[source]#

bet_inskull_surf_file[source]#

bet_outskull_surf_file[source]#

bet_outskin_mesh_vtk_file[source]#

bet_inskull_mesh_vtk_file[source]#

bet_outskull_mesh_vtk_file[source]#

bet_outskin_mesh_file[source]#

bet_outskin_plus_nose_mesh_file[source]#

bet_inskull_mesh_file[source]#

bet_outskull_mesh_file[source]#

class osl_dynamics.utils.filenames.OSLFilenames(outdir, id, preproc_file, surfaces_dir, pos_file=None, elc_file=None)[source]#

Container for all pipeline file paths for processing a single M/EEG session.

Parameters:

outdir (str) – Base output directory.
id (str) – Session identifier.
preproc_file (str) – Path to the preprocessed data file.
surfaces_dir (str) – Path to the surfaces directory.
pos_file (str, optional) – Path to a .pos file (only needed for CTF data).
elc_file (str, optional) – Path to an .elc file (alternative format for head shape points from CTF data).

outdir[source]#

id[source]#

preproc_file[source]#

surfaces_dir[source]#

surfaces[source]#

bem_dir[source]#

coreg_dir[source]#

coreg[source]#

fwd_model[source]#

pos_file = None[source]#

elc_file = None[source]#

src_dir[source]#

filters[source]#