osl_dynamics.files.mask#

Mask files.

MNI152_T1_1mm_brain.nii.gz
MNI152_T1_2mm_brain.nii.gz
MNI152_T1_8mm_brain.nii.gz
ft_8mm_brain_mask.nii.gz

Mask files can be resampled in FSL, e.g. to resample the 1x1x1 mm grid MNI mask file to a 5x5x5 mm grid:

flirt -in $FSLDIR/data/standard/MNI152_T1_1mm_brain.nii.gz -ref $FSLDIR/data/standard/MNI152_T1_1mm_brain.nii.gz -out MNI152_T1_5mm_brain.nii.gz -applyisoxfm 5

When plotting brain maps the resolution of the mask file must match the resolution of the parcellation file. Parcellation files can also be resampled using the code above.

Attributes#

`surf_right`
`surf_left`
`surf_right_inf`
`surf_left_inf`
`surf_right_vinf`
`surf_left_vinf`
`path`
`directory`

Functions#

`get_surf`(inflation)
`combine_surfs`(left_file, right_file)

Package Contents#

osl_dynamics.files.mask.surf_right = ''[source]#

osl_dynamics.files.mask.surf_left = ''[source]#

osl_dynamics.files.mask.surf_right_inf = ''[source]#

osl_dynamics.files.mask.surf_left_inf = ''[source]#

osl_dynamics.files.mask.surf_right_vinf = ''[source]#

osl_dynamics.files.mask.surf_left_vinf = ''[source]#

osl_dynamics.files.mask.path[source]#

osl_dynamics.files.mask.directory = ''[source]#

osl_dynamics.files.mask.get_surf(inflation)[source]#

Parameters:: inflation (int)

osl_dynamics.files.mask.combine_surfs(left_file, right_file)[source]#