osl_dynamics

Subpackages

• osl_dynamics.analysis
  • osl_dynamics.analysis.connectivity
  • osl_dynamics.analysis.fisher_kernel
  • osl_dynamics.analysis.gmm
  • osl_dynamics.analysis.modes
  • osl_dynamics.analysis.power
  • osl_dynamics.analysis.regression
  • osl_dynamics.analysis.spectral
  • osl_dynamics.analysis.static
  • osl_dynamics.analysis.statistics
  • osl_dynamics.analysis.tinda
  • osl_dynamics.analysis.workbench
• osl_dynamics.config_api
  • osl_dynamics.config_api.pipeline
  • osl_dynamics.config_api.wrappers
• osl_dynamics.data
  • osl_dynamics.data.base
  • osl_dynamics.data.processing
  • osl_dynamics.data.rw
  • osl_dynamics.data.task
  • osl_dynamics.data.tf
• osl_dynamics.files
  • osl_dynamics.files.mask
  • osl_dynamics.files.parcellation
  • osl_dynamics.files.scanner
  • osl_dynamics.files.scene
  • osl_dynamics.files.functions
• osl_dynamics.inference
  • osl_dynamics.inference.callbacks
  • osl_dynamics.inference.initializers
  • osl_dynamics.inference.layers
  • osl_dynamics.inference.metrics
  • osl_dynamics.inference.modes
  • osl_dynamics.inference.optimizers
  • osl_dynamics.inference.regularizers
  • osl_dynamics.inference.tf_ops
• osl_dynamics.models
  • osl_dynamics.models.dive
  • osl_dynamics.models.dynemo
  • osl_dynamics.models.hive
  • osl_dynamics.models.hmm
  • osl_dynamics.models.hmm_poi
  • osl_dynamics.models.inf_mod_base
  • osl_dynamics.models.mage
  • osl_dynamics.models.mdynemo
  • osl_dynamics.models.mod_base
  • osl_dynamics.models.obs_mod
  • osl_dynamics.models.sage
  • osl_dynamics.models.simplified_dynemo
  • osl_dynamics.models.state_dynemo
• osl_dynamics.simulation
  • osl_dynamics.simulation.base
  • osl_dynamics.simulation.hmm
  • osl_dynamics.simulation.hsmm
  • osl_dynamics.simulation.mar
  • osl_dynamics.simulation.mvn
  • osl_dynamics.simulation.poi
  • osl_dynamics.simulation.sm
• osl_dynamics.utils
  • osl_dynamics.utils.misc
  • osl_dynamics.utils.model
  • osl_dynamics.utils.parcellation
  • osl_dynamics.utils.plotting
  • osl_dynamics.utils.topoplots

Submodules

• osl_dynamics.array_ops

Package Contents

Functions

run_pipeline(config, output_dir[, data, extra_funcs])

Run a full pipeline.

Attributes

__version__
logger

osl_dynamics.run_pipeline(config, output_dir, data=None, extra_funcs=None)

Run a full pipeline.

Parameters:

• config (str or dict) – Path to yaml file, str to convert to dict, or dict containing the config.

• output_dir (str) – Path to output directory.

• data (osl_dynamics.data.Data, optional) – Data object.

• extra_funcs (list of functions, optional) – User-defined functions referenced in the config.

osl_dynamics.__version__

osl_dynamics.logger